PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00424.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 249aa    MW: 28377.2 Da    PI: 7.9379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00424.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-202676155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g
  Rsa1.0_00424.1_g00010.1 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDKAALKLYG 76
                             78*****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-322686No hitNo description
PfamPF008472.3E-132676IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222785IPR016177DNA-binding domain
SMARTSM003803.5E-372790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-302785IPR001471AP2/ERF domain
PROSITE profilePS5103223.5512784IPR001471AP2/ERF domain
PRINTSPR003672.7E-102839IPR001471AP2/ERF domain
PRINTSPR003672.7E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDKA ALKLYGQDAY LNLPHLQQKQ GPPVNKTQRF KWVPSRKFIS MFPSRGLLNV  120
NAQPSLHVIQ QRLDELKKNG LLSQSSINLL DEQKKPEVDL NEFLQQMGIL KDKCQAEASE  180
VGECQYTPPW KEQEENVSPF TDQSLGSETV IDEMPGSETS AMHFDFSNFE SYDDLGFPSI  240
WNFCGSLDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-192884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894690.0AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139025.11e-159PREDICTED: dehydration-responsive element-binding protein 2F-like
RefseqXP_013675410.11e-159PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-128DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLM4DDP91e-159M4DDP9_BRARP; Uncharacterized protein
STRINGBra014617.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-114ERF family protein